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Bioinformatic companies *(79) Molecular Modeling *(62)
Bioinformatics *(290) Software for Crystallography *(103)
Data Management Software *(236) Software for Genetics *(40)

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Array Designer DNA Microarray Software - DNA microarray design and analysis software for SNP scoring and cDNA probes. WIN downloadable demos and online ordering are available.
Beacon Designer - Molecular Beacon Design Software - Designs multiplex molecular beacons for optimal Tm and secondary strutures.
BioAssistant - Shareware tool for Macs to assist PCR chemists in designing DNA probes.
BioKin - Produces software for data analysis in enzyme kinetics, receptor binding, and viral dynamics. Also provide consulting services and custom-software development for high-throughput screening in drug discovery.
Biochemistry, Thermodynamics, and Structure of Nucleic Acids - Computational tools from John SantaLucia's Lab. - Wayne State Univ.
Delta2D - Difference Analysis of 2D Gels - Compare 2D gel electrophoresis images from different experiments or samples. Produce dual channel images that show clearly the differences and similarities between two gels.
Forager - PC software that calculates equilibria of molecules that physically interact with each other.
Free Software for Molecular Biology - Gopher site listing over 150 free software programs in molecular biology and related areas - from Indiana Univ. Program files found at: gopher://
Linux for Biotechnology - A collection of biotechnology related software for Linux.
MeltCalc99 - Program to perform thermodynamic oligonucleotide stability calculations for LightCycler.
Molecular Biology Notebook - On-line courses for the teaching of molecular biology.
Molecular Programming LLC - Sequence Quickie-Calc, an easy to use, calculator like program for DNA and protein analysis.
Molecular Toolbox - Links to programs and databases for online analysis of DNA, RNA and protein sequences.
NIH search form for PDB query - allows to ask for molecule visualisation in browser readable form
Oligo Software - Oligo is a Molecular Biology Insights product. It has been created for difficult sequencing and oligo projects. First on the market (1989).
PCR primer / oligo design software - Primer Premier - PCR primer design software and oligo tm calculator for real time, nested, cross species, and gmo oligo primer design.
PSORT WWW Server - Analysis and prediction of protein sorting signals found in amino acid sequences.
Redasoft - Makers of software with a restriction enzyme database to design experiments and produce high quality graphics.
SAM: Sequence Alignment and Modeling System - SAM is a collection of tools for creating and using HMMs for biological sequences. Free license for academic and nonprofit usages.
Scanalytics Gel Analysis Software - Scanalytics makes gel analysis software for Windows and Macintosh.

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