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Software for Crystallography
Data Management Software
Software for Genetics
whatUseek Collection Sites
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whatUseek Directory Site Listings:
Array Designer DNA Microarray Software
- DNA microarray design and analysis software for SNP scoring and cDNA probes. WIN downloadable demos and online ordering are available.
Beacon Designer - Molecular Beacon Design Software
- Designs multiplex molecular beacons for optimal Tm and secondary strutures.
- Shareware tool for Macs to assist PCR chemists in designing DNA probes.
- Produces software for data analysis in enzyme kinetics, receptor binding, and viral dynamics. Also provide consulting services and custom-software development for high-throughput screening in drug discovery.
Biochemistry, Thermodynamics, and Structure of Nucleic Acids
- Computational tools from John SantaLucia's Lab. - Wayne State Univ.
Delta2D - Difference Analysis of 2D Gels
- Compare 2D gel electrophoresis images from different experiments or samples. Produce dual channel images that show clearly the differences and similarities between two gels.
- PC software that calculates equilibria of molecules that physically interact with each other.
Free Software for Molecular Biology
- Gopher site listing over 150 free software programs in molecular biology and related areas - from Indiana Univ. Program files found at: gopher://iubio.bio.indiana.edu:70/11/IUBio-Software+Data/molbio.
Linux for Biotechnology
- A collection of biotechnology related software for Linux.
- Program to perform thermodynamic oligonucleotide stability calculations for LightCycler.
Molecular Biology Notebook
- On-line courses for the teaching of molecular biology.
Molecular Programming LLC
- Sequence Quickie-Calc, an easy to use, calculator like program for DNA and protein analysis.
- Links to programs and databases for online analysis of DNA, RNA and protein sequences.
NIH search form for PDB query
- allows to ask for molecule visualisation in browser readable form
- Oligo is a Molecular Biology Insights product. It has been created for difficult sequencing and oligo projects. First on the market (1989).
PCR primer / oligo design software - Primer Premier
- PCR primer design software and oligo tm calculator for real time, nested, cross species, and gmo oligo primer design.
PSORT WWW Server
- Analysis and prediction of protein sorting signals found in amino acid sequences.
- Makers of software with a restriction enzyme database to design experiments and produce high quality graphics.
SAM: Sequence Alignment and Modeling System
- SAM is a collection of tools for creating and using HMMs for biological sequences. Free license for academic and nonprofit usages.
Scanalytics Gel Analysis Software
- Scanalytics makes gel analysis software for Windows and Macintosh.
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