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ARIA
- is a software for automated NOE assignment and NMR structure calculation.
B
- B is a Java-based, on-line biomolecular modeling package. Formerly called BIOMER.
DL Poly
- A parallel molecular dynamics simulation package
DipoCoup
- A versatile program for 3D-Structure homology comparison based on residual dipolar couplings and pseudocontact shifts. Structure data base search.
EGO
- A parallel program for molecular dynamics simulations of biomolecules.
FleXX
- FlexX is a computer program for predicting protein-ligand interactions
GRAMM (Global Range Molecular Matching)
- A program for modeling protein docking.
LinuxNMR
- A guide to use free available programs for the structure elucidation of proteins
MORASS
- analyzes 2D NMR NOESY data from oligonucleotides and proteins to evaluate cross-relaxation rates from which interproton distances are obtained
Moldy
- General-purpose molecular dynamics simulation program
NAMD - Scalable Molecular Dynamics
- High-performance simulation of large biomolecular systems
SSIA - Simulation of Sterically Induced Alignment Tensor
- A program for predicting the magnitude and orientation of a sterically induced alignment tensor
SWISS-MODEL
- SWISS-MODEL is an Automated Protein Modelling Server running at the GlaxoWellcome Experimental Research in Geneva, Switzerland.
Spectrum Research, LLC.
- Develops and sells Computer Assisted Structure Eluicidation (CASE) programs to the pharmaceutical, biotech and chemical industries.
YASARA
- (Yet Another Scieitific Artificial Reality Application) is an interactive real-time molecular dynamics program.
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