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Biodesigner - A molecular viewer for win9x systems with sequence editor and protein builder.
 
Desktop Molecular Modeller v4.0 - a simple program for constructing and viewing small molecules and proteins in 3D with some energy calculation/minimization capabilities. Run on any PC with Windows 9X/NT.
 
MOLMOL - A program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. For UNIX and Windows NT/95.
 
Marvin Molecule Sketcher And Viewer - Marvin applets are created for the web developer who builds chemical internet/intranet sites. The package contains an applet for editing and visualizing molecules on a web page and one for viewing molecules on a web page.
 
Molda - A molecular model building program for displaying data from MM2, MOPAC, Gaussian94, charmm and amber4 outputs. Supported on most windows, mac and unix platforms.
 
Molecule Viewers and Editors - The OpenScience collection of links to various free molecule viewers.
 
OpenRasMol - Provided for the convenience of users and software developers of open source versions of RasMol.
 
Protein Explorer - View, rotate, and explore 3d structures of proteins, dna, rna. Clickable sequence to structure. Color molecule by multiple protein sequence alignment. Requires netscape and the chime plugin, which is only available for windows.
 
RasMol 2.7 - Visualization of (bio)molecular structures. Forked version.
 
Swiss-PdbViewer - A user friendly interface allowing to analyze several proteins at the same time.
 
VMD - Visualization and analysis of biological systems such as proteins, nucleic acids, and lipid bilayer assemblies.
 
WebLab Viewer - A Windows9X/NT program to visualize and analyze small molecules and proteins. Also available as an ActiveX Control.
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